MRIQC: individual T1w report

Summary

Subject ID: 041_ExercisePre.
Date and time: 2018-05-06, 22:56.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.27132181178162423
cnr			4.77989330384017
efc			0.5739953856743463
fber			129.99981689453125
fwhm	avg		3.723986666666667
fwhm	x		3.63398
fwhm	y		3.92457
fwhm	z		3.61341
icvs	csf		0.18796183498441457
icvs	gm		0.4673531884378434
icvs	wm		0.344684976577742
inu	med		0.9147466421127319
inu	range		0.2845170378684996
qi	1		0.0
qi	2		0.0007877600368377227
rpve	csf		25.142844854652036
rpve	gm		11.637722483415534
rpve	wm		18.327238398558364
size	x		180
size	y		256
size	z		256
snr	csf		2.1345195596067423
snr	gm		10.285268490182823
snr	total		11.677758716997483
snr	wm		22.613488101202886
snrd	csf		16.175170133483974
snrd	gm		35.97862910513428
snrd	total		36.324301305360315
snrd	wm		56.81910467746271
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.7394786931526522
summary	bg	mad	11.530305862426758
summary	bg	mean	45.88459777832031
summary	bg	median	45.144527435302734
summary	bg	n	2810777.0
summary	bg	p05	28.069744873046872
summary	bg	p95	66.47606506347654
summary	bg	stdv	11.941722869873047
summary	csf	k	23.497630569636417
summary	csf	mad	126.74594116210938
summary	csf	mean	305.9510192871094
summary	csf	median	284.6806640625
summary	csf	n	10984.0
summary	csf	p05	145.6942512512207
summary	csf	p95	501.9774154663087
summary	csf	stdv	133.36383056640625
summary	gm	k	0.15048489025348433
summary	gm	mad	59.81165313720703
summary	gm	mean	633.3875122070312
summary	gm	median	633.2186889648438
summary	gm	n	45409.0
summary	gm	p05	531.768408203125
summary	gm	p95	735.4942993164062
summary	gm	stdv	61.564918518066406
summary	wm	k	1.0190639694821213
summary	wm	mad	39.706302642822266
summary	wm	mean	996.9736938476562
summary	wm	median	1000.008056640625
summary	wm	n	187663.0
summary	wm	p05	918.1552307128907
summary	wm	p95	1063.3022338867188
summary	wm	stdv	44.22163391113281
tpm	overlap	csf	0.2202862650156021
tpm	overlap	gm	0.539592444896698
tpm	overlap	wm	0.5523368120193481
wm2max			0.6533126562771467

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	b11144844c7b38a40eb8496dc97f801d
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.