MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.27132181178162423
cnr4.77989330384017
efc0.5739953856743463
fber129.99981689453125
fwhmavg3.723986666666667
fwhmx3.63398
fwhmy3.92457
fwhmz3.61341
icvscsf0.18796183498441457
icvsgm0.4673531884378434
icvswm0.344684976577742
inumed0.9147466421127319
inurange0.2845170378684996
qi10.0
qi20.0007877600368377227
rpvecsf25.142844854652036
rpvegm11.637722483415534
rpvewm18.327238398558364
sizex180
sizey256
sizez256
snrcsf2.1345195596067423
snrgm10.285268490182823
snrtotal11.677758716997483
snrwm22.613488101202886
snrdcsf16.175170133483974
snrdgm35.97862910513428
snrdtotal36.324301305360315
snrdwm56.81910467746271
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.7394786931526522
summarybgmad11.530305862426758
summarybgmean45.88459777832031
summarybgmedian45.144527435302734
summarybgn2810777.0
summarybgp0528.069744873046872
summarybgp9566.47606506347654
summarybgstdv11.941722869873047
summarycsfk23.497630569636417
summarycsfmad126.74594116210938
summarycsfmean305.9510192871094
summarycsfmedian284.6806640625
summarycsfn10984.0
summarycsfp05145.6942512512207
summarycsfp95501.9774154663087
summarycsfstdv133.36383056640625
summarygmk0.15048489025348433
summarygmmad59.81165313720703
summarygmmean633.3875122070312
summarygmmedian633.2186889648438
summarygmn45409.0
summarygmp05531.768408203125
summarygmp95735.4942993164062
summarygmstdv61.564918518066406
summarywmk1.0190639694821213
summarywmmad39.706302642822266
summarywmmean996.9736938476562
summarywmmedian1000.008056640625
summarywmn187663.0
summarywmp05918.1552307128907
summarywmp951063.3022338867188
summarywmstdv44.22163391113281
tpmoverlapcsf0.2202862650156021
tpmoverlapgm0.539592444896698
tpmoverlapwm0.5523368120193481
wm2max0.6533126562771467

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumb11144844c7b38a40eb8496dc97f801d
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.